Scaffold Ga0138514_100016661

Overview

Basic Information

• Taxon OID: 3300011003
• Scaffold ID: Ga0138514_100016661
• Source Dataset Name: Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Shell Corporation
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1273
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location

• Location Name: Ranch near Red Deer, Alberta, Canada
• Coordinates
  • Lat. (^o): 52.172047
  • Long. (^o): -113.738964
  • Depth (m): .15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F000805	Metagenome / Metatranscriptome	883	Y
F001079	Metagenome / Metatranscriptome	785	Y
F066970	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0138514_1000166612	F000805	N/A	VHQYYEYLQSHQQTQQDPATWHVRWLDLAWLWGFLIVLALVILLWLWQYRSTRQRAALYPIDQFGGYTSELAGPATLFFILFCVVVTAWAVVLIVGHIVWGQKF*
Ga0138514_1000166613	F001079	AGAAG	MAATGTPAPSVLPYVSWSSLTIAAVPADAWPPVFASMQALKGHVQEYPGCQKLEAFVHAEAEEAVRIHCYTTWDTHEQLEAYLERGYTFDRMLVDVAGITAQPTLVMEKIF*
Ga0138514_1000166614	F000280	GGAG	MAARDQEQRQSPARPLAGYRDVGEDVRHSRGSMIRAWIILAVLMAFYLGWTLVVFFLEPGLR*
Ga0138514_1000166615	F066970	AGG	VYVKHLTSLQFLTYVAFFAVVLSAMFKFVPGKAPPVRTDPY