NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0138324_10054003

Scaffold Ga0138324_10054003


Overview

Basic Information
Taxon OID3300010987 Open in IMG/M
Scaffold IDGa0138324_10054003 Open in IMG/M
Source Dataset NameMetatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-7 (Eukaryote Community Metatranscriptome) (version 6)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1530
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)18.7998Long. (o)-20.70285Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F096372Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0138324_100540031F096372N/AMRVIFFVLALEACVQAARLRAKKAEPLPFTELLEMFKARGEEHGSVQDPQWMHINKRLVMFRDAVHHLVLAKKNHKMSKTNATVTKIVAKKKDDETVGHVFEHVADDKTCEPAGLMGTEKGVTAPDGCKELCAGMAGCVAFAFSIKPFKQCEFFSECTETDANKIRKYSIYAIMKDGDIEDRETCGELPTYPSSKPKNFGDTGGGMAGEPKAFVAEDEVAYVCERGSTTNGAKDGPTEFKTVCGENGYFVPEKAGCVAKSECGPMPCVRKAHLSGKVEGTKKNPKVELLCDAGYSLDGEKVIEGGNMDNAKLYIECLDIGKWEAPVDYLGKKGKACEPFAFVPASGMIKMYNKVFEVLFIASCNTELTKWAEMEEKMPPKLEDGTVCGENVADDKEGDCKSLVDDLKTLFEDAKGAGNEGFDAKPFCKDMWDLLKMDEPAAQTEC*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.