Scaffold Ga0137575_10008601

Overview

Basic Information

• Taxon OID: 3300010970
• Scaffold ID: Ga0137575_10008601
• Source Dataset Name: Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV1, april 2016
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: FASTERIS
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1798
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location

• Location Name: Jussy, Geneva, SWITZERLAND
• Coordinates
  • Lat. (^o): 46.25
  • Long. (^o): 6.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F017972	Metagenome	237	Y
F031792	Metagenome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137575_100086011	F017972	GGAGG	VRTRHLRLVTQEHSVTMTSKSEVSSAFGPVSPGSTTLLAQETLRLNQLRQLTELLNSLESVVANLNYRSSTVLDTLLIATQGVRVA
Ga0137575_100086014	F000821	GAG	MQTAQRERVMNREYLKAKVDLCLNQAEIDIEQQEIARAIKNLERANSAMARLFE*
Ga0137575_100086015	F031792	AGG	MWVELWERWELLMSYEPDWNDPVFYAEEGEPEVKCNICGDLLDEDDIVWADIDGQIVKDGNDTAWCVSCLPSEGESNE*