Scaffold Ga0137575

Basic Information
Taxon OID	3300010970 Open in IMG/M
Scaffold ID	Ga0137575_10001213 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV1, april 2016
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	FASTERIS
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010970 Open in IMG/M

Scaffold ID

Ga0137575_10001213 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV1, april 2016

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

FASTERIS

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5267
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

5267

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location
Location Name	Jussy, Geneva, SWITZERLAND
Coordinates	Lat. (^o)	46.25	Long. (^o)	6.28	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Jussy, Geneva, SWITZERLAND

Coordinates

Lat. (^o)

46.25

Long. (^o)

6.28

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F038107	Metagenome	166	Y
F050170	Metagenome	145	N
F069680	Metagenome	123	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0137575_100012133	F050170	N/A	MTDKINLYVNSGYRKADETTTNLRVIVPSGLIKSYGKDYFTLSITSFYCFNTLYQMDENNSDFNLIIRDTSNNIYQTLYFSFVNCVGNPNVYDIRDELNTLLNGYISVTYDKIKNLFLFTRTKAVDTSNNKIYLKNKTSSNFLGFPKDYNNKEILITTIGVYSYQPINVIYHQQLLINIDGDIQMAINNLDNKNSDVLEPSGVLFMKPIDINKNQLIMYDNIDGNASFQYKISQKDTINQINFRITNQDNEEISTLGDWQMTLQLERHDEDMTESLLKQIKEYISYIFLIIGTYLS*
Ga0137575_100012136	F069680	N/A	MIKEIKLSSLNNVIPKVNKKEPPRSVNHDLTPFYFTSMFIGSKNSGKSYGLVKMIKNYEEQPVKDSKGNILEIRTILFCPTGNSEANPIYTTLKSLDFSNDVILNYSDTKLIEKLNEIEKDKQDIEDYNKYVKAYKIFEKNENINLIDPEYLILLHEHDFEHYNNIPKPRYKHPPIVFIILDDLIGDNKVFKQQSLINNITIKHRHLGVNLVFTSQNPKSIPNIIRNNIDVYVLYKFANVKMVIDKIFEEVSGLLTETQFEEIYKHATSEPYNALVIDNHPKVDRDKRFKKNFNVVLTHGGESAHEHLLTF*
Ga0137575_100012138	F038107	N/A	MNISNPYNNVGNVLPPQPFGSVVDHVKNNENVLIETAGLNQYNFLDVGQELNAWKHLQQVQRAAFPPNRTNEFNTDTTNKYYPHIQPLFYKGVAQNYSLLNNPPDHNLNLDMSSQRTYIKPFYTTKEQFGSVLPIEANNSILPLGPIYVKKTIISPN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0137575_10001213

Overview

Ecosystem & Geography

Associated Families

Sequences