Scaffold Ga0139247_1009293

Overview

Basic Information

• Taxon OID: 3300010967
• Scaffold ID: Ga0139247_1009293
• Source Dataset Name: Microbial communities from the inside layer of the microbial mat covering an inactive hydrothermal chimney from the Kolumbo submarine volcano, Santorini, Greece - V16_c.in
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Hellenic Centre for Marine Research (HCMR)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2859
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Chimney Microbial Mat → Inactive Hydrothermal Chimney Metagenome Study

Source Dataset Sampling Location

• Location Name: Kolumbo submarine Volcano, Hellenic Volcanic Arc, Aegean Sea, Greece
• Coordinates
  • Lat. (^o): 36.52
  • Long. (^o): 25.48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F099485	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0139247_10092935	F099485	AGG	MKQQIIRNWQHSPSKTQVARIPVKAVSKSLQQSQTFTHEDLMGLSWMLSEEGD*