Scaffold Ga0137776_1282029

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0137776_1282029

Scaffold Ga0137776_1282029

Overview

Basic Information
Taxon OID	3300010937 Open in IMG/M
Scaffold ID	Ga0137776_1282029 Open in IMG/M
Source Dataset Name	Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Minnesota - Twin Cities
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3063
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Dco-Ecs Fumarole Sampling, Azores 2015

Source Dataset Sampling Location
Location Name	Furnas, Sao Miguel
Coordinates	Lat. (^o)	37.772747	Long. (^o)	-25.304072	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014639	Metagenome	261	Y
F020887	Metagenome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137776_12820291	F014639	N/A	LFFLHKRVFESKIEGILTAAAGHESNSLPAGSYRYRVLSGYAESLCTEFADRWDLDPDLLRARIPGLAKLAGLSGPPPPKNYARPASLVMLVTPLAVFLLGVLAGLIGVGFRLVGGR*
Ga0137776_12820294	F020887	AGGAG	MQTKITLYGEIAGTIWMPAVECCKEFHIELKRTPRTSTTRTYPGIAPRSMEITCLRDALLYLTNDGDFQSCAINWAMLEVSHYLGDETRGAGTVRVRTRVWELRGQDENADCFAQVHV*

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