Scaffold Ga0137844_1086635

Overview

Basic Information

• Taxon OID: 3300010934
• Scaffold ID: Ga0137844_1086635
• Source Dataset Name: Microbial mat microbial communities from the Kallisti Limnes subsea pool, Santorini, Greece - 2-BIOTECH-ROV9-P3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Hellenic Centre for Marine Research (HCMR)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1058
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Subsea Pool Microbial Mat → Kallisti Limnes Metagenome Study

Source Dataset Sampling Location

• Location Name: Santorini, Greece
• Coordinates
  • Lat. (^o): 36.4542567
  • Long. (^o): 25.40523
  • Depth (m): 229

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028039	Metagenome / Metatranscriptome	193	Y
F041493	Metagenome / Metatranscriptome	160	Y
F104992	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137844_10866351	F104992	N/A	MSGNADLTLTAASDKLQIVDPGGGARNLDLIFVDASETGVTTGFAEVYVQNEADADEALTIRDGNNSDNAIGVLDQNAGGWFRFVGGQW
Ga0137844_10866352	F028039	GGA	VKXIKFENRWNITLEKHLKDNNLTELPEPEWSDDPTMAYIYLPAKSLKGDTVRMDKTKARMFPESIVGYLEKGGLMKLPAKVEASQSSQIKEQLPKMETEKPKPQKIKLPKIGE*
Ga0137844_10866353	F041493	AGGA	MXDSNXDXXYTTIYDSVSGDPFRVKTERVGHYLSKIKKESRLEGKQLVFTGEWIPSFVKTKQEIIGSPISSEPKQIASVGQSKAGKRRRGRRXRKK*