Scaffold Ga0137844_1076359

Overview

Basic Information

• Taxon OID: 3300010934
• Scaffold ID: Ga0137844_1076359
• Source Dataset Name: Microbial mat microbial communities from the Kallisti Limnes subsea pool, Santorini, Greece - 2-BIOTECH-ROV9-P3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Hellenic Centre for Marine Research (HCMR)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1702
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Subsea Pool Microbial Mat → Kallisti Limnes Metagenome Study

Source Dataset Sampling Location

• Location Name: Santorini, Greece
• Coordinates
  • Lat. (^o): 36.4542567
  • Long. (^o): 25.40523
  • Depth (m): 229

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F035963	Metagenome	171	Y
F048916	Metagenome	147	Y
F059346	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137844_10763591	F059346	N/A	METILHXAWSLFVAIGWXFLNRITSKVDALXKEKADISIVKHNSGXIHEGDKRIDQLQHTTVPRQEYKYDVASLHLRLNEMEKSKEDKVQDIRIIENRKETSGKTK*
Ga0137844_10763592	F035963	AGGA	VEKLNELILATTASFAAMGVWFFKRLFKSIDIAHERIDKLXSQQVDRNYLETQLAPIREDLNIILQHLLEKKNG*
Ga0137844_10763594	F002078	AGTAG	MGQQWFQIVGEVVLIFTAVTGALPDRWVQKVPMLGTMWPIFNWLAGNVFNNINHPNGMAAKVEVEEEIDRAKAKVRERDGMPDVLNGL*
Ga0137844_10763595	F048916	AGCAG	MIAPVANFGLGLYNAXTXYSKECAWYXKVEFSPQTKXWLKTNNPPELVVKDLGKVARNNDIYKEVCD*