Scaffold Ga0133913_13279590

Overview

Basic Information

• Taxon OID: 3300010885
• Scaffold ID: Ga0133913_13279590
• Source Dataset Name: northern Canada Lakes Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1066
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008303	Metagenome / Metatranscriptome	335	Y
F031763	Metagenome	181	Y
F053891	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_132795902	F031763	AGGAG	MKPYGYVWVKDKHEPKFFWFEGEATDVQKNFGGEVVPVYR*
Ga0133913_132795903	F008303	N/A	MIDKLILSAVLGVVGFNGLFPDPQQPITPWQLQVQAKEKSIGEMCDRKPKSKEAKDLCRRWRKLNG*
Ga0133913_132795906	F053891	GGA	MPRQKSELTKSGKSIGIRVTQSEYSEYMKLGGGKWLRKLLQEQRDRNEHKQSKS