Scaffold Ga0133913_11331570

Overview

Basic Information

• Taxon OID: 3300010885
• Scaffold ID: Ga0133913_11331570
• Source Dataset Name: northern Canada Lakes Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1832
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007310	Metagenome	353	Y
F010398	Metagenome	304	Y
F013084	Metagenome	274	Y
F018927	Metagenome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_113315701	F010398	AGGAG	MEISIQGITKVNYELVIDEDVFNDACEECGLDPANYKKFTKDDWDVLNPHLVQAVVDNESDIDYTEIHVSSSVFADTITIDDNNNITTVYYDKNRKIDSVEVL*
Ga0133913_113315703	F018927	AGG	MNKHIEITRHLTVDGTTTYYVIEKSKNSSSIIWNGTSKQAAYQVAYRNARKENTPLYDTLYKAEFDRNGVKHIIPVGNELLEVNN*
Ga0133913_113315705	F013084	N/A	MGIFSVLELMQETKEAVLTRGHNVKNWLVLGNDCYALECTDCKMTCMVKEKPQPNEMKASGEALAMNCVKPVKEKKLRKK*
Ga0133913_113315706	F007310	N/A	MRTVLWNNTERWFNHHHYELLIEDITGFDLKESLCPETVKYMAKRLSDTKYQRRFKTLYTIYENEYNALVEKFNNQAENNGKIEVS*