Scaffold Ga0133913_11313581

Overview

Basic Information

• Taxon OID: 3300010885
• Scaffold ID: Ga0133913_11313581
• Source Dataset Name: northern Canada Lakes Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1846
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024770	Metagenome / Metatranscriptome	204	Y
F044450	Metagenome / Metatranscriptome	154	N
F053995	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_113135811	F024770	AGGAG	MAVSHQIVSVGTTATKLTSDYDGKDGQTINVQNPSGGATVYLGGEGVTTSSYGFLLAAGISFSIELQDDEKLYAVVASSTQ
Ga0133913_113135812	F044450	N/A	MKAQILKSMIVDGRKLVAGDIVEVKGWRHAKSLANNRYIKLIEEDVVEEVAEASKPKATKKTKEVAE*
Ga0133913_113135813	F053995	AGGAG	MALVNRLTKGEAAVGALQIGDNDMVYGIEFGTVAIDPANLNATTRGATTFTLTGAATTDIIIVNPPADLNDDLIYCGAAVTAADTVSIYLYNPTASAINQASATFSYCWIDTTA*