Scaffold Ga0133913_10468271

Overview

Basic Information

• Taxon OID: 3300010885
• Scaffold ID: Ga0133913_10468271
• Source Dataset Name: northern Canada Lakes Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3324
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001915	Metagenome / Metatranscriptome	617	Y
F017628	Metagenome / Metatranscriptome	239	Y
F027490	Metagenome / Metatranscriptome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_104682711	F017628	AGGA	MATYDIEALKADLPTAKELAQFVYDKTQIALDLVGKPKEDQYHAAKNALEGKKVPSEFLTDENPYVDRRELIPEDELRVMPPRSEDLPSEDSQVHYFGATNMPHPDDPQSDKKVAIDFKKYENGVITFQIVAPVE
Ga0133913_104682714	F027490	GGAG	MYGKVISGGAAMRKGLTKGINDKLAGHAAENERRQTVATAVENAYKVLTLSSQHTNNVRGGKFTKPSVPSKV*
Ga0133913_104682718	F001915	N/A	MVEMSDSIYGAEIDGVLTRDRAVFRHRLTVATTEQIFNKGREFIAVCRDLEDKLLGFCWFDRGGYTTYSNEEISNAKFHHLDLQLPVKTRVRMINEMIDQHILWAHTWGVPVVCSTSIRGEHDGFMKIHQKRGFTVNGSYAWIRTEKGIACLK*