Scaffold Ga0133913_10365566

Overview

Basic Information

• Taxon OID: 3300010885
• Scaffold ID: Ga0133913_10365566
• Source Dataset Name: northern Canada Lakes Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3815
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015302	Metagenome	255	Y
F032569	Metagenome	179	Y
F040990	Metagenome	160	Y
F089853	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_103655662	F089853	GGA	MKIASVMAPVVTSDPINGHRYQGWTPCIEWCDEYCEGPWLFITEGVFEFEWDSDYVMFMLKWA*
Ga0133913_103655663	F032569	N/A	MIKVSVSDEVFNRAYWNARRTLPVETLESPRQYGRRWREEFKCRPELIAHTREICYVFDRDEDYTWFMLRWG*
Ga0133913_103655665	F040990	AGGTGG	MNYYYEIDEKYDGTIFGDKWRYWCMYNCSPADNGKMCFKTHDDYVARSSRVWLENANAVYLVHPKWNLGRGQVNDKEFTMIKLRAKTIKWWHDEPG*
Ga0133913_103655666	F015302	GGTGG	MSRDEYYRDTAARLDTIIGGDTTHFLRLQRVKNEYDALARDVPIGQGFLTFYDYVKEYYGVKLEFDGDNVSLEYAVVDERKYTVFLLKFGQ*