Scaffold Ga0133913_10008713

Overview

Basic Information

• Taxon OID: 3300010885
• Scaffold ID: Ga0133913_10008713
• Source Dataset Name: northern Canada Lakes Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26515
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001937	Metagenome / Metatranscriptome	614	Y
F015731	Metagenome / Metatranscriptome	252	Y
F020909	Metagenome	221	Y
F047674	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_1000871318	F015731	AGGGGG	MSVEIEKGVIDFDVNTAAWLEQYKSALAKIKELTEVADVARAHIEQALGDSETGMFLNRPVVRWTHVESKRFDTKRAREILPEQVIAALEVISTSRKFTLVNEDN*
Ga0133913_100087133	F047674	GGA	MDSDIETLEEIDEALAHALITRKQSIDSKKHIVDKFIDDLLDSRLELTK*
Ga0133913_1000871331	F020909	GAGG	MSLTKRGKRVRAVAILIGIIIIWQVASNLWWVGVGAPQAEFLGWCWGSMTECVVL*
Ga0133913_1000871336	F001937	AGG	MSSDIATIIYSYFFVAAGVLTGFSIIAKHTIAKHTEHIEDKLSRIEYALYNEGKTGLINKVEELLENQQSIKIDVEVMKAKVGK*