Scaffold Ga0133913_10003536

Overview

Basic Information

• Taxon OID: 3300010885
• Scaffold ID: Ga0133913_10003536
• Source Dataset Name: northern Canada Lakes Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39231
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (85.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001937	Metagenome / Metatranscriptome	614	Y
F014940	Metagenome / Metatranscriptome	258	Y
F074312	Metagenome / Metatranscriptome	119	Y
F075600	Metagenome / Metatranscriptome	118	Y
F083897	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_1000353611	F014940	AGGA	MALTDGRTTVYHLNRLAGTLINDVPQLDFNGAANTWAFNVTGKKYSRGIDALNQIYAFRNSGKNYQYDTPGAFNALAGTVGLGEAEAARRIAS*
Ga0133913_1000353621	F001937	GGAG	MSPDTATIVYSYFFVAAALLGGLALIAKHTISKHTEELKDKLSRIEYALYNDGKTGLINKVEELLENQQQIKIDVEVMKAKAEL*
Ga0133913_1000353624	F075600	N/A	MSEIKVQHRSFSSFTSWLRCGKAWQLERGMQAPSEPAWWFVGGSAFHLAAEKYLLQKFDGTKETKEIFPF*
Ga0133913_1000353625	F083897	N/A	MAKNISDLKATPGSEADYRGLGPIRVCPCGSDLWNVKCKFDEDNEIGIYFLDMNCALCDSAATSPTPEGRL*
Ga0133913_1000353637	F074312	GAG	MAEGIEKFIAKIEAAKTEPLNPKDSEWFEGFNQGLDWAIRILTGDKSAS*