NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0133547_11889224

Scaffold Ga0133547_11889224


Overview

Basic Information
Taxon OID3300010883 Open in IMG/M
Scaffold IDGa0133547_11889224 Open in IMG/M
Source Dataset Namewestern Arctic Ocean co-assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1099
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium BACL1 MAG-120619-bin26(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)79.2466Long. (o)-150.0613Alt. (m)Depth (m)190
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072762Metagenome121Y
F090890Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0133547_118892243F090890AGGAMSIWWDKYKFLVILLVFACFTYLLSDNQTANEGGKILDDETFAKIQECITRNKIGFSKEIFEEGAEEQMIKDDIDRTTQQVIALCTDYGKETE*
Ga0133547_118892244F072762N/AMNEFLGFWIVIIIVVCMAWIWRKLKDIETHLKERDLVQEKHNKDIAAYLSSISQEAINKEWERNNKE*

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