Scaffold Ga0133547_10668926

Overview

Basic Information

• Taxon OID: 3300010883
• Scaffold ID: Ga0133547_10668926
• Source Dataset Name: western Arctic Ocean co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2062
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 190

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088745	Metagenome	109	Y
F098231	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133547_106689264	F098231	GGAG	MEVGDLVKQKEIGAAIVTEFIRSSLSMGCIGIITTVHNKTNLSYDGRSRGDVTVQWSNGKKEIIPEIYLEKVSDEQGS*
Ga0133547_106689265	F088745	AGAAGG	MNKDLDIKIYLAIDGIEHKIRRAAYLSTGEPFQKDIYEALEIIKKVKEIVEKRVDKS*