NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0133547_10636613

Scaffold Ga0133547_10636613


Overview

Basic Information
Taxon OID3300010883 Open in IMG/M
Scaffold IDGa0133547_10636613 Open in IMG/M
Source Dataset Namewestern Arctic Ocean co-assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2125
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)79.2466Long. (o)-150.0613Alt. (m)Depth (m)190
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013783Metagenome / Metatranscriptome268Y
F015210Metagenome / Metatranscriptome256Y
F048642Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0133547_106366131F048642N/AMASSFNLQEYILFRTEIKRELTNAEVDTNFQMVSNPWVTTRVYEIGNIVYHPVIVDDPSTTGEDQVLAWWRSNVRTTQGVFDTSQWDMIGGIGSGNINIQGANSFGKINVNSTAATGSLQTGANGLVTSANPNDTFNFIAGAGMQLQYDLTTKSIM
Ga0133547_106366132F013783AGTAGLILEGITFKLALDFFTFLKKNRITSTSIKVDFFDRVKHQYINFDDVAAMEVYYNTNYKPLDNCNLGDLVSIVFFLATSDLYGFTTEYRAMDIVGKLKLVTGSAYDTQRNNNRKTDISRQIQLIKNAVAEYKKYYLELKFIYTTGIYSPCYAVPGWSENTWYLKSFREAFITSRDTSEFPYSDITIEEFPPN*
Ga0133547_106366134F015210N/ALTMKRKDITIFDVDDTLVVTRSKIKVHNPKTGFEIDLTPQEFNTFKTRPNDKMDFTDFQSLDILKGGKIIEWVFSILRRAIAKGAPVGIITARDDSSLIQKFLSHNGININPNYIFAINDPALKLKGSTAEKKKEAFKKFIDMGFNNFTFFDDDRENINIANSLNKEPGIKMKAKLIKQKWIPKFDDFK*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.