Scaffold Ga0133547_10327721

Overview

Basic Information

• Taxon OID: 3300010883
• Scaffold ID: Ga0133547_10327721
• Source Dataset Name: western Arctic Ocean co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3164
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 190

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010829	Metagenome / Metatranscriptome	298	Y
F015849	Metagenome / Metatranscriptome	251	Y
F041432	Metagenome / Metatranscriptome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0133547_103277211	F041432	N/A	ELKLIGGLFRNQSKKGDVYYSGKGEDGTQYVLFRNAYWKEGTENKPYFRLHQKVAKGSSSASVAMD*
Ga0133547_103277213	F010829	GAG	MGNLADHRRLRTEQGLYKEDPGTGTYTKQEADYIPFLGNNPSEEKPAIYTARFGVTGGTIELEAKRSGGKLYITCLADEKHNRAIFECVERFVKAIFDGSARKIKEAEPEDSEMIKLKKQIDALEKENADHIMTLETLKDIMK*
Ga0133547_103277216	F015849	GGAG	VTGIIDNSKTVDRKRWTDLLHVGWMFHQQAIKDAQSPIIGAKPSEEQLFHMAISVAIQDAIALIQQLEAYGYFEGDEFPEDMDISRPGPAG*