Scaffold Ga0133547_10004789

Overview

Basic Information

• Taxon OID: 3300010883
• Scaffold ID: Ga0133547_10004789
• Source Dataset Name: western Arctic Ocean co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39340
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (19.23%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 190

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008190	Metagenome / Metatranscriptome	337	Y
F008425	Metagenome / Metatranscriptome	333	Y
F013783	Metagenome / Metatranscriptome	268	Y
F017335	Metagenome / Metatranscriptome	241	Y
F022460	Metagenome / Metatranscriptome	214	Y
F064641	Metagenome / Metatranscriptome	128	Y
F087205	Metagenome	110	N
F105240	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133547_1000478916	F017335	N/A	MNIRSLELKNRLTIEKTGEQYFDLSAPSFTYKRELGVKALHYVTVDQAGRIDKISQQYFGTGAYVDAICIVNNIFNPFSVSEGDILAIPQLKDENLVYSRPDAASRPSETLAQYVNMDRQREQDQSRLQRLTQKAKTKKNGVKTPIPPNMLQQGQEAKIFKGGKILLGANLPTRTNTNTES*
Ga0133547_1000478919	F008190	GAG	MEKEHIEFNFIYSTNAQCVKSFLGNVPRSIECINYMDIFNKLTKNDYYQYEPSDAVVSSYLMRQLQNAIGRNISTTIFYVLGNLEKETIMEIQDYVGSLSNKPITYKIYHSPDIIVNGSAKLFDDIIEFE*
Ga0133547_1000478924	F013783	N/A	VVIEGITFKLALDFFVFLKKNRITSTGIKIDFFNNAKHQFIDFVDVAAMQTYYDSNYIPLNGSGTGDLVSISVFSSTSDLYDFITTFVASDVTGNLKLKSGSSFDSQRDSGRKVYINRQSLLIKNAVADYVKYYKELNSIYKTGIYSSLYAVPGWSQGTWYLNSFREALNSPRSVSEFPFTDEKIEQDPPS*
Ga0133547_1000478938	F008425	AGG	MGTKAKPNAITYKQFVAHMDKGNKVYMKKPKSWQKIWFWWESKSEKWFLNRAPEKREDGRLVIEKSGWLIATQLESHLNFMERHGYSYYINKDNE*
Ga0133547_100047894	F105240	N/A	MAISVTTILGTDSLSGSRLVINDNFNVLASEINAMEVYFTPSAGTITNLTNVSTEALRVGLNTILLDISASTFDILTNVNMTGNLSMNGGGIFRNDTSPVTQNDTLAGAGMTLNIGTGTAIPPYTMWRVGNSNTGVTLTLSLNNGSIGQEIFFVYTEGTDKVTINGVANNLVLDPPTSFNIDLTGLGQSVHLLAIDNGAGAAVWYIVGGQGYVIS*
Ga0133547_1000478942	F064641	N/A	METPQEDKDENAIRHYKGTVKQFKDMFDDLAGGEDTNAYGSPVRQGFGVHPTRDKDNKSPHWEDSYEDEKTQNENHIPSFKKFTKI*
Ga0133547_100047896	F022460	AGGA	MATVKDTNTGYPSLYRATYEEGWELKNTGYDYSKNLLNNTMSTYMFGNTHIKKFLEDYLTPIMVFYINKVKYVRIFYNFAVPKWYQKIN*
Ga0133547_100047899	F087205	N/A	MANTNSYCNDPEEAACLDALIKEINDDLTIACQIPFTVPKKELAHIIQRAKGYFYKIYEDSVEQMYIALPAGAVLKQDFLQGVPKGTGQANEVITNKNQISNPRGIVQMPTRVYSVNAVFEIGGFSGEDGGFGSNSFNAGDVDFSIDKFIYDDVYGAGLGSENLMYYVVNSLFMDNARQALLPQISYTYNRLTRKFRFQGELPTQACIFEIFSTIPDCALFQDEAFVRYCIGQAKIQLARILGTFSFNLPGNITINYDMISSEGREEVDRVVEEIKADEGTDYFFTG*