NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0124850_1017250

Scaffold Ga0124850_1017250


Overview

Basic Information
Taxon OID3300010863 Open in IMG/M
Scaffold IDGa0124850_1017250 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2301
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium altum(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006248Metagenome / Metatranscriptome378Y
F042056Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0124850_10172501F042056GGAGMREENLLFATREEAVDRHLFALAVMSDTSHDYTDARVLQNWLSDVIGHLEALPEPTQIVLGLPLFKIGDDHFHWRADQIKNWHKERCRLLRQQLSELRREQWQSPVGALPSRFGAPQYF*
Ga0124850_10172502F006248GGAGGMSFQVVRHEHPNIFVVNRQTYETYRFTVGDNVMPAFDGAPSDLSEARRTAIAFLAQSQTKSIKTRHTGA*

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