Scaffold Ga0126358_1061965

Overview

Basic Information

• Taxon OID: 3300010856
• Scaffold ID: Ga0126358_1061965
• Source Dataset Name: Boreal forest soil eukaryotic communities from Alaska, USA - W4-2 Metatranscriptome (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1155
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil → Forest Soil Eukaryotic Communities From Alaska, Usa, For A Soil Warming Experiment In A Boreal Forest

Source Dataset Sampling Location

• Location Name: Alaska, USA
• Coordinates
  • Lat. (^o): 63.883
  • Long. (^o): -145.733

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011804	Metagenome / Metatranscriptome	287	Y
F087476	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126358_10619652	F087476	GGA	MTDTATESAKSTLTTIVKFNTAICAAFAAIWALAAVLAHQHGNPLTGLSGIGFLVGLLVTISALNVRLQVELEQPDSGE*
Ga0126358_10619653	F011804	N/A	EVCMNLEPVDFRSMDLHRRIALVLRKEPGLVRVFAERLRSKLATARSAGAVSDDVWEWYIILTLWPPLQVIRLLEESSERAARLRQKSPFVSLLSTPETRGRETE*