Scaffold Ga0136851_10030422

Overview

Basic Information

• Taxon OID: 3300010413
• Scaffold ID: Ga0136851_10030422
• Source Dataset Name: Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_9
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Novogene Bioinformatics Technology Co., Ltd
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6006
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment → Mangrove Sediment Microbial Communities From Mai Po Nature Reserve Marshes In Hong Kong, China

Source Dataset Sampling Location

• Location Name: Mai Po Marshes at Hong Kong
• Coordinates
  • Lat. (^o): 22.0
  • Long. (^o): 114.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F103060	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136851_100304224	F103060	GGAGG	MAIISPADLPVVLKVQSDPLKKYVLAKLGFPHVDVEISEDQFETVLRNTGDFIAGYFPREQKFAIFYTTPLVSTYPMPEDAYWIQEVSWDPVTTRIDDVFGAESFLFNIGNISGIQNILTDYHLLQAYRRFSQKILGTEGHWDVVGEVDGGPGEQLIRLYPTPKGAFPVVVVYYPVVNHFRSPQARHVAYDMLLAEAKIMVGQVRRKIAGIPTPDGGSLGLDGEALIAEGTEERNGMIEKAIHLGEPLPIVKW*