Basic Information | |
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Taxon OID | 3300010412 Open in IMG/M |
Scaffold ID | Ga0136852_10041505 Open in IMG/M |
Source Dataset Name | Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_10 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Beijing Novogene Bioinformatics Technology Co., Ltd |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4852 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment → Mangrove Sediment Microbial Communities From Mai Po Nature Reserve Marshes In Hong Kong, China |
Source Dataset Sampling Location | ||||||||
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Location Name | Mai Po Marshes at Hong Kong | |||||||
Coordinates | Lat. (o) | 22.0 | Long. (o) | 114.0 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F021773 | Metagenome / Metatranscriptome | 217 | Y |
F039135 | Metagenome | 164 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0136852_100415052 | F021773 | GAG | MVLLNNEFLDNILDRGLKARYSENSQIFLTDLKNLLISKNRLKLGKFVDKECVEDDEVSKINGLFDEVKFDIEKDWNVLVNARITARNIIDKLLPDQKLESDMISAIYWLGPNKDDEHQEDIVIELDGGKQYSFFLNKNLLSKKSASFNTFAENLLGQDLELLYKQEYLPKWDKLTQEWIRILYENANKNIQLHIEKFIDPKRIESIGYFEYFDIRHSDYKYKYLGEFIKDFDKNILKLSDLLTEVWKHRDNCFMDPERVYAEWMEAKIVILNSRILENLFTTSLKSNFANDIKKLEDGFKLAGGAVKMKLFKSFIDKLGCEERPLYFLGSNGNIFNLLPERDFFRKNYDDMNIKFDYHVNFAVSEQEESNDFKVKLILELDDKKLLDMTITIKFSHEMSGRLTASYKFNLSNNFNYMIATKKSNNVEE* |
Ga0136852_100415053 | F039135 | N/A | MKYLKNYTLYKESILVDLAYQDVIELVESLTIWHDALLSALSAEEVDMFDTFNLPVDDFKDKLDLDALESNVEFINSLSSIALKKSALQHSDDYSTFLNKPCKFMFIYGINRNELENPDYLLFQSWNETLDKWEEVKSYKINDEVKKFYDKLSSRTIELVDGDQNYIYTTNNGNEWVLQNSDKENDIYKKVFRKEEFQDFIKERKIKVNII* |
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