Scaffold Ga0134123_10000001

Overview

Basic Information

• Taxon OID: 3300010403
• Scaffold ID: Ga0134123_10000001
• Source Dataset Name: Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 447633
• Total Scaffold Genes: 711
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 409 (57.52%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil → Terrestrial Soil Microbial Communities With And Without Nitrogen Fertilizer From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Kellog Biological Station, Michigan
• Coordinates
  • Lat. (^o): 42.3938
  • Long. (^o): -85.3708

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031713	Metagenome	182	Y
F036462	Metagenome / Metatranscriptome	170	Y
F038776	Metagenome / Metatranscriptome	165	Y
F042051	Metagenome / Metatranscriptome	159	Y
F042607	Metagenome	158	Y
F065185	Metagenome	128	Y
F069394	Metagenome	124	Y
F074102	Metagenome	120	Y
F085609	Metagenome	111	Y
F094469	Metagenome	106	Y
F103138	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134123_10000001109	F031713	N/A	MSNKNVTIDLKSRKDVDGQVFYVGKIKAPVLIDCSMGAVFLVFVADKGEEQLQIALMDNKELDE*
Ga0134123_10000001112	F074102	AGG	MKKAKIVNNYKFKNMSYSDMVMFLNKELPINIKYNEELINRIHCKYPILSKSQISMIVKLVFQSIRDFLVLGKILNFNKLFFDTKLHFFDYRRKGRILKALKVKISTPPPIRNL*
Ga0134123_10000001162	F042607	AGG	MAFKIIDNKKVEMTQDEWLMYEKIVKSYNTLTNKGEDLFVDLFEVDQNGIIIFLKPPSKRQTSFEIFLFLMALMQHQHLRLMHAQIDDLCSQIKEKIKK*
Ga0134123_10000001163	F036462	AGGA	MTQQVKLGDFLGFDLEENFMNFDLTEIQQVLEKLQDTEAIDLAHAELLQQQALRGADIITEYLGKVVKTVGYLEAKVNSTKNKVSLDYQAPDGARTTADMKKWAGESSTEVENVQIKLAKAKASKIVLEKKYDILIRSHHHYKDIAAGLRRSILGYVPISREKIPEGYE*
Ga0134123_10000001168	F042051	AGGAG	MTTFGEISYNDEVYGDRKINNSKDLFLRLDEGDNELRLLTNPFQYLVHKIKKDPTNPKDFGQKVPCSAIHGSCPACAGDKAKPRWLYGVIVRKTGTYKIFDVSFAVFSQIRKLAKNPRWGDPTKYDINIVVDKNGGATGYYSVQPIPKEPLSGEDQRTKDNADLDDLKRRVTPPTADVVQKRLDKIFGDVSFNDVSAQVASSTKKENNIRKTISPNKTQAVSMSDDENVDEFPDYDGQS*
Ga0134123_10000001176	F038776	GGAG	MSKFSIDYSRLENKIYKKAYRLKDVKDQLETVAFDVVRFKDGDKGADLWQVQSSDDGDYIVSLYQQDEEKTAALWDVTISKVAGDLQISYKGDPLVKITSSKLGIPSEQLIKVKDYLPARLAENKKLVKSLLNELPNAVKQAVLNKYPELV*
Ga0134123_10000001180	F094469	GAG	MNKNALKKILDHPDKDEIISKLVIGIPSKSIHDWLESKYTNINEAKFVIAEKSIKSFKDNYLDLYSIIQEDLIKTKSALINNTQDNLQLSIQNLPTYKNIILKSAEEELDIRQVIKRMVVGLETRFSQVFDEIQEDPRNINTRVDRLVIEYAEVISNLLDKCHKFTEQPANQVIQHNVTLQVVDQHISVFHDVIKEVLSQMDLETSLYFMEVFNEKMAKLKAPDKDMPISSEIRLAEAKLLNETINKKINE*
Ga0134123_10000001194	F069394	N/A	MVGFFMIKKSYSVQMTYDVSDSEKLQAERALLCFNHVLKLLDIASNHLDIMKTPFKNNPEMSPEEVMKARAAIRRFRDKSIENFNEFKIASFKCVNVMQIFSSDTQTLKLMKSFISSIDDLEVKVNDFADLFNDLEDKDFPKNVITCIEGIQKQCEEIDEIVDERVKSHIQSNILAKNWVDTVSDDLQMRVQKKTPLILDLFNKRQDQLNNIIKEKSQLGN*
Ga0134123_10000001269	F085609	N/A	MKSDEEVIAEASRIEYEEKTGKLFIVFEVINEKLKQDIKKNWTKDIEYKIIDKCLVLNLNEDE*
Ga0134123_10000001277	F103138	GAG	MQGTILLNYNENIHKVEEEEKNRFLKGLLDQMGIPISEFWSDDQPLSIDQKIKLRNLLITYSIQVIDDLDGHLTIYVEGELVGEWKKSTYKLKRDLSQIDPKKQLYLEMEINCWSLFEDSGTGNYDL*
Ga0134123_10000001286	F065185	N/A	MKIQFDDKSYIECRKLNDKIIVIVSAKDYNNPLKKITNSVELNIEEFRKLISDVQT*