Scaffold Ga0134122_10097259

Overview

Basic Information

• Taxon OID: 3300010400
• Scaffold ID: Ga0134122_10097259
• Source Dataset Name: Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2325
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospirae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil → Terrestrial Soil Microbial Communities With And Without Nitrogen Fertilizer From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Kellog Biological Station, Michigan
• Coordinates
  • Lat. (^o): 42.3938
  • Long. (^o): -85.3708

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009436	Metagenome	318	Y
F022276	Metagenome / Metatranscriptome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134122_100972593	F022276	GAGG	MGGILALALAFGIVFGARKLCSLIGAPLWFARFLFVCAALGVTYLLAEAVVPDSKKPWGVWLAMLGAASGIIPLGFIMFKHIEEEGEDNRKAGDSPQSHSE*
Ga0134122_100972594	F009436	GAG	MLSMDLAHISSAAELRRIEHPHLGRIHPPGFLKTTIGTVTGTSQKAVAIADYSSGIRQTVAVQIDPRKFMVTIASSYVLVTLKEGRSRHPVIHKTWKLVGQRKGEGVTEFFGTVSTYIDSDGLKWEHRFDRAPHEDELIGFGSNGEEVLIITLESFYPTTAPGVSGIVISPSP*