Scaffold Ga0134126_10297502

Overview

Basic Information

• Taxon OID: 3300010396
• Scaffold ID: Ga0134126_10297502
• Source Dataset Name: Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1895
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil → Terrestrial Soil Microbial Communities With And Without Nitrogen Fertilizer From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Kellog Biological Station, Michigan
• Coordinates
  • Lat. (^o): 42.3938
  • Long. (^o): -85.3708

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010179	Metagenome / Metatranscriptome	307	Y
F035113	Metagenome / Metatranscriptome	173	Y
F042581	Metagenome / Metatranscriptome	158	Y
F103656	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134126_102975021	F103656	AGGAG	MIAAREYDSVRSTADTESTFDGRTIPAGMEGAVLDAKPDGSILVEFAFAPQAADSDGDFVQGVLTAGQYVVIRAHIQE*
Ga0134126_102975022	F042581	N/A	MSEVPLSERQARLLAVVAEGDGDWDARWIDLTVNYRYGPGAGTVLRELEGLQQMGLVVRDDSRSGVGGRWNVTAAARPDLIDHKEMER*
Ga0134126_102975024	F010179	AGGAGG	MCDATAVIGNLPANAAKLLAVEILLVEPESLGDDVLESCLYLLRERLQAA*
Ga0134126_102975025	F035113	AGGA	MNDFSADFAQLDDSALLSMRAEMRTELERLPPASLNHATLSALYDETTEEVNRRARKAWSRS*