Scaffold Ga0126341_1180486

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0126341_1180486

Scaffold Ga0126341_1180486

Overview

Basic Information
Taxon OID	3300010394 Open in IMG/M
Scaffold ID	Ga0126341_1180486 Open in IMG/M
Source Dataset Name	Coral microbial communities from Florida Keys, Florida, USA - Orbicella T D metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	565
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location
Location Name	Florida Keys, Florida, USA
Coordinates	Lat. (^o)	24.6669	Long. (^o)	-81.5441	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F104456	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126341_11804861	F104456	N/A	LKASFFSRKPLKLLETESLAEVQFVIDSCRFGSQSNCLDNSNKDCDWPIVACFIREQCTVDATFARLESKLWFENSAKGVGKLLDSLS

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