Basic Information | |
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Taxon OID | 3300010392 Open in IMG/M |
Scaffold ID | Ga0118731_113473296 Open in IMG/M |
Source Dataset Name | Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | JGI facility at Oak Ridge National Laboratory, Brown University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 598 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Sediment → Marine → Coastal Sediment Microbial Communities From Rhode Island, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Rhode Island | |||||||
Coordinates | Lat. (o) | 40.435 | Long. (o) | -70.483 | Alt. (m) | Depth (m) | 78 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F097365 | Metagenome / Metatranscriptome | 104 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0118731_1134732962 | F097365 | GGA | MANNSNWKEMKRHAFEAFRKDGRLSVSELESLVEIGCSDGEFDELERVQLINIISNLTRADMNDEMWAKIDELIHRFELGHDSEAKIEHLDD |
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