Basic Information | |
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Taxon OID | 3300010389 Open in IMG/M |
Scaffold ID | Ga0136549_10009965 Open in IMG/M |
Source Dataset Name | Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Oregon State University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6423 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (52.63%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin |
Source Dataset Sampling Location | ||||||||
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Location Name | Baltimore Canyon, US Atlantic Margin | |||||||
Coordinates | Lat. (o) | 38.05018333 | Long. (o) | -73.82193333 | Alt. (m) | Depth (m) | .12 to .14 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F011666 | Metagenome | 288 | Y |
F026260 | Metagenome | 198 | Y |
F035748 | Metagenome | 171 | N |
F059943 | Metagenome | 133 | N |
F080644 | Metagenome | 115 | N |
F103222 | Metagenome / Metatranscriptome | 101 | N |
Protein ID | Family | RBS | Sequence |
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Ga0136549_1000996510 | F103222 | N/A | MDREKLVAAMRQEVQQIVALQTMLKNVAKAEEQGYQKADQRRLDAIADLFAGGNESLMTAYYKVKDEQGR* |
Ga0136549_1000996516 | F035748 | N/A | MKLYAPEYAGMTVWAVADPKSGKGAYTATKGNTPPPNASYGHPIGRYDSDGTYWTFCPNAGEEDPNSPRSSRYAKHPHGVDEQRAAIKAKAWGTLSSMGSYKETEF* |
Ga0136549_1000996518 | F026260 | N/A | MKRTFDTASAVKTLRDGLAKGYWTLEDLDTPPPGTQMTFADYRRYCVAQGYVGNQPVYRNLLREAEENQQDDFIL* |
Ga0136549_1000996519 | F080644 | AGGA | VKIVTITESNGCAVPLQRLPLIQRNPVGQPRYYWNEARPDLKYTSITSILSATQSENTKHALRRWKQKIIAEGGDPDETRDQAARRGSLIHDWFELFLHHKAPEPPEAIAPWCERIKTSPLWQHLDHVVCTEHQVCSDEGAVPFAGTLDALVKLNGEFVLMDL |
Ga0136549_100099655 | F011666 | GGA | MFSEAATAKILEEWLRAGDIKGIYNAALLLNTSLHQQRTMTKWLAGEAARNLGKPELEDELIQDAILMGDQ* |
Ga0136549_100099659 | F059943 | AGG | MNKVANFAELFPDWQEPNRGPGVSYCVAPNARMFDYELLLPGERSLRGCIRAVDKQDAIRILNNRHPNCSVVEVSKGRRIVSQKKKA* |
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