Basic Information | |
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Taxon OID | 3300010389 Open in IMG/M |
Scaffold ID | Ga0136549_10002719 Open in IMG/M |
Source Dataset Name | Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Oregon State University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13254 |
Total Scaffold Genes | 40 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (45.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin |
Source Dataset Sampling Location | ||||||||
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Location Name | Baltimore Canyon, US Atlantic Margin | |||||||
Coordinates | Lat. (o) | 38.05018333 | Long. (o) | -73.82193333 | Alt. (m) | Depth (m) | .12 to .14 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000919 | Metagenome / Metatranscriptome | 834 | Y |
F008943 | Metagenome / Metatranscriptome | 325 | Y |
F022879 | Metagenome / Metatranscriptome | 212 | Y |
F058114 | Metagenome / Metatranscriptome | 135 | Y |
F087124 | Metagenome | 110 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0136549_1000271919 | F022879 | N/A | MTHHVAHTNKMIFELREQHQAQITRLQDKINDQEQEIAKLKTLISLLTVEREYDC* |
Ga0136549_1000271926 | F000919 | N/A | MRFRNIEFRWSKCNNKYELVKWNESPNSDTCYVIAFFDKDKEGYDMRTIGDRFFEDKDAWVVGKYGLEFLNEIFEIERIEEELK* |
Ga0136549_1000271928 | F058114 | N/A | MIEITFTREELRHLYDVLLRNHLQVKQSVMNKIDEELIADEIYELLGDLECLDPTLDEEWQNKLWYDDPEDEYTIAVKRDPKMWNRQTIAELKTLIGKLEEK* |
Ga0136549_1000271932 | F008943 | GGAGG | MKFDEFDWFAILIIPISLIVIGGVLTYDAQQQRALFQQTYNKNLECRQALKDQTVGRVNEICGDVPVIGDFVK* |
Ga0136549_1000271940 | F087124 | GGAG | MNITFKQHILLLAGLTLLCDESAKVNNTEMQHEILELSDIIQEYAERKQRADERRNAKS* |
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