NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0136549_10002666

Scaffold Ga0136549_10002666


Overview

Basic Information
Taxon OID3300010389 Open in IMG/M
Scaffold IDGa0136549_10002666 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13372
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (47.37%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location
Location NameBaltimore Canyon, US Atlantic Margin
CoordinatesLat. (o)38.05018333Long. (o)-73.82193333Alt. (m)Depth (m).12 to .14
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022879Metagenome / Metatranscriptome212Y
F029725Metagenome / Metatranscriptome187Y
F034857Metagenome / Metatranscriptome173Y
F047660Metagenome / Metatranscriptome149Y
F090331Metagenome / Metatranscriptome108Y
F092055Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0136549_100026661F029725N/AMTNRTELEWFLKEKCREDVDLFDTIISEYVWNLSDSKLTELEDFLANNFGDD*
Ga0136549_1000266611F047660N/AMSYIQIPDFVLDSIINNLQRGYDICEGVDYSSKEIEKSSEYATGYSRATIASVLDDLKRYKQISN*
Ga0136549_100026662F092055N/AMDQVYHYHTNWKEGKVNQMWIQQVDDKFIAIAYNPEKNVSMPMSKPRTSYAETLQWVRKWCGTFCTLPA*
Ga0136549_1000266621F022879AGGAGMTHHVAHTNKMLFDLKEQYQAQITRLQSKISEQEQEIAKLKTLISLLSIEREYDC*
Ga0136549_1000266625F090331GAGMTITVALLIYSGLVALVSSLMVYYFKVIRPKEEAQYK*
Ga0136549_1000266634F034857AGGMIRKFIKWFITPSQKPIIEDVDLYAKIVELENRIANLEEENIETSNSLYELGNSIDAVDVRIDILSLEAFTKNV*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.