Scaffold Ga0136551_1003117

Overview

Basic Information

• Taxon OID: 3300010388
• Scaffold ID: Ga0136551_1003117
• Source Dataset Name: Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3942
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location

• Location Name: Jussy, Geneva, SWITZERLAND
• Coordinates
  • Lat. (^o): 46.25
  • Long. (^o): 6.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F001125	Metagenome / Metatranscriptome	769	Y
F005741	Metagenome / Metatranscriptome	391	Y
F021481	Metagenome / Metatranscriptome	218	Y
F034472	Metagenome / Metatranscriptome	174	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136551_10031171	F021481	N/A	MSPILDTAKGRFYKKGDVFTTGKSGITGTISEIISVRPNLTKLGLNTENGLRWAMVKIGA
Ga0136551_100311710	F034472	AGGA	MPNWVYNTLTIQGPKSEVDMIKDRLNKPFTLAQETYGMGDISSSGFPTKFEVV
Ga0136551_10031172	F005741	N/A	MKNRYRVEIYDANKLNDVTIYSDSGVDKDYLTELVFSNLRKFSGRVNAYVFDNVKKKKTTAMFLDESVVTKYKVA*
Ga0136551_10031176	F000311	GAGG	MYFELTAPSQVAFARAIWEADMIGLDPQQIEPLTFNVGTGSIEKVSRIRDKYNLVESYTSDYEPTGYTGR*
Ga0136551_10031179	F001125	GGCGG	MGDRANFGFKDSKGDTLYLYGHWAGHNMLANLAEAVSAAESRWQDESYATRIAISNLVGDEWTQTTGWGLSINHILDNEHKVPVINWTDKTFTLFEEDLTTEVFSLSLADFVQKYSRLVMV*