Scaffold Ga0136821_1196105

Overview

Basic Information

• Taxon OID: 3300010387
• Scaffold ID: Ga0136821_1196105
• Source Dataset Name: Acid mine drainage microbial communities from Malanjkhand copper mine, India - M8 k-mer 51
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Xcelris labs Ltd
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3064
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Mine Drainage → Sediment → Acid Mine Drainage Microbial Communities From Malanjkhand Copper Mine, India

Source Dataset Sampling Location

• Location Name: Malanjkhand, India
• Coordinates
  • Lat. (^o): 21.9985
  • Long. (^o): 80.697983

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017934	Metagenome / Metatranscriptome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136821_11961051	F017934	AGGAGG	MTERTTGPNLTDPDEAVRNRIFERAKAINGKLLARLQTVADDLDAGGHLAALGGLDGIEREVERMRSFLL