Scaffold Ga0136449_100162041

Overview

Basic Information

• Taxon OID: 3300010379
• Scaffold ID: Ga0136449_100162041
• Source Dataset Name: Sb_50d combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4354
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013913	Metagenome	267	Y
F020887	Metagenome	221	Y
F025336	Metagenome	202	Y
F054526	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136449_1001620416	F020887	GGAGG	MHKTITLYGEVAGRIWMPAVECTKDFHLELNHIPRNSTTRTYPGIAPRSMEITCLRDALLHVTNDGDFQSCAITWAVLEVSHYFGDETRRTRTAKIRTRVWELRGQGPDADCFTGGGTL*
Ga0136449_1001620417	F054526	AGGAG	MSHLQNNLNTPELIEQVIGSGLFSFDDESYFSRQGCEHCADGLGAEVYDLRGYRSLEHRELYEFHVCGDCINSQYYGGNYA*
Ga0136449_1001620418	F013913	GGAGG	MILTPSTKGSFIAGVGLWCLIWAALFKADEIAQAGGLQRWISSEQCLRWIRNHKSTSLLGTELFNYGTHGISDPLGVTFALGGTLVNVLMIFLLLPMRERAKRSGTALNLQP*
Ga0136449_1001620419	F025336	AGGAGG	MVLIALIAAAEATLFSASQAKRYHARRQQVLMGNAVDSRRSLPLVDEYLKRKTAGASRVQVFVAAKVAEICRLAVHTRSFEYLLLHLIRTAIHKRRQKLSISHLEVTL*