Scaffold Ga0136449_100056726

Overview

Basic Information

• Taxon OID: 3300010379
• Scaffold ID: Ga0136449_100056726
• Source Dataset Name: Sb_50d combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8674
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000151	Metagenome / Metatranscriptome	1897	Y
F000174	Metagenome / Metatranscriptome	1764	Y
F004611	Metagenome / Metatranscriptome	431	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136449_10005672611	F000151	GGGGG	MQHGMNGGNGQGNGSLLRNGDAHVQEVVKTAHEELRQLMRQRAEIMKRIGTLKQTISGLANLFGDDILGEDLLELVDRKTGGRQPGFTKACRMALMEAGRPLAVREVCEQIQQRLPAVLLRHKDPLASVTTVLNRLVEYGEAQSLVRENGRRAWQWVSEPASVEQHNAASAALSRL*
Ga0136449_1000567267	F004611	N/A	MRGHILVPDRLPISRRWTVIASGLLCCGLGVVVLYTRRSAFSSPLSVVVVAAIGLAAVLLQLRFYNREHSIPVQAPVWLNVLGVLFAMAALFADVLRLSGPMAEAMALGAVGSFAISSALILHAFRKRRIASK*
Ga0136449_1000567269	F000174	AGG	MKNVYEVLRQKELELARLEKEVEALRVAAPLLSDDKESIGEAPSNKPTLASSTQAQQPIRIPQAAVNASPQPARAAGWEDTAKRWP*