Scaffold Ga0136449

Basic Information
Taxon OID	3300010379 Open in IMG/M
Scaffold ID	Ga0136449_100008842 Open in IMG/M
Source Dataset Name	Sb_50d combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010379 Open in IMG/M

Scaffold ID

Ga0136449_100008842 Open in IMG/M

Source Dataset Name

Sb_50d combined assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28341
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (88.89%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

28341

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (88.89%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.1318	Long. (^o)	11.881	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Germany: Weissenstadt

Coordinates

Lat. (^o)

50.1318

Long. (^o)

11.881

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F024018	Metagenome	207	N
F032128	Metagenome	180	N
F036061	Metagenome	170	N
F040983	Metagenome	160	N
F056264	Metagenome	137	N
F064338	Metagenome	128	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0136449_10000884212	F032128	GGAG	MSSLIVMPGSEEFKKTLAAIAKAPTSRRKLAEPVDLVGHTLMLNTALVKTFQCGGFVLGPNRPIGIVDEQSQQAPIRKALEEKKLIDVTGKDMATKGFKGTGGQTSAITEEDTGKKVFVGRDRRGNLYIATPRSKTEAKRFEREIRTTGTLKSVDFETETTGLGSITEEVIESSEQPVKTPAKKSAKPTKKVKKNVRPRRTSGNAVRSRN*
Ga0136449_1000088422	F040983	GGAG	VDFYRDISPNIDLRDELHTVLHGSEELAGQGRTVILRRLSNTTCPGCWDPKTGGSTRPNCPYCQGEGYQFIETRELMALFRGVAPVYKPGVLATGEYPQNSMGYTDMNRCTAYVEVFRDDGSQVYPDYERYTIQTAKAYDKLYEVKVDPEGEPIIDSSGRFTRTAKWKVLSVVPTHGDNGRVEFWELGLEKENV*
Ga0136449_10000884223	F056264	GAG	MGSPVTIPNPAPGCSYLNYPRAVLNTPHPVYGGNLAGFGVGDLPTQFESGIPVFNAITANATSGLIDVAANAIELTATFSDLHTSCTITVFVADGETVVATWKNVSTLNSGNLYAGFAEQRKLIGGGSLVFQVSNYDGSGSITLLVKRTG*
Ga0136449_10000884230	F064338	GGAGG	MATPGLIPIPEDLALFPVPTENVNGLLATSEDLGLTVEEKQELDNYQSALRILGPAAGAVLMCPGNQENVADEDKCPYSSKCPLLRMHKAPEDKMCPVERMIVEERFNAWCRELSTDPVLAKESDRVAISDLCWIDLQMQRSLHILSKGDEARLTVTNPKDVHPETFLPISWEKVIHPNVELLVTLQTQRRMILKDWMLTPEQKWKREKAEGKGSGKDIASKQSARADRLRAIKSSNED*
Ga0136449_10000884234	F036061	GGAGG	VIENWTNPAISQQGIHATETPAGLFNDAPSGHLFAELTDLAAATAAGFRTVLVPPDTPLFCFYCHDTEAPEYRLRRKGGKYVALCHRPGTIEGCWDRDVAPMCEYKDHEGIQCDQVAEWRVAFGKDMLMSTHRCLIHVPPALSDVSEHRVFPI*
Ga0136449_10000884235	F024018	N/A	MRPETSHRRIHLSAHPTPSLDLAKLLAADNVSTADRIWEVSFEAKMPAELVTEEDLKCPDCGVVHDPDIEYARTVSDVVTILGGPDAQPSVDRVREHILSQEVGDGLHMTDFILTGVKLLAAAEVV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0136449_100008842

Overview

Ecosystem & Geography

Associated Families

Sequences