NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136449_100003034

Scaffold Ga0136449_100003034


Overview

Basic Information
Taxon OID3300010379 Open in IMG/M
Scaffold IDGa0136449_100003034 Open in IMG/M
Source Dataset NameSb_50d combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50391
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (70.37%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005824Metagenome / Metatranscriptome389Y
F015123Metagenome / Metatranscriptome257Y
F025415Metagenome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0136449_10000303415F005824AGGAGGMSTTRSVLYRFARDLGNVEAVEHGYQRGGLAGAVEGAAQRQARRAIYREGNRQINRAVQAVGLGHKR*
Ga0136449_10000303416F025415N/AMANCRGGGGVLFIEYDVTGDGEIEVVALINAVEENDEDRDGEAWLTWRRTYDDEGLGCAPVPWGDLAQMEATTDPETLRSIVERVILADRRTKEVIDT*
Ga0136449_10000303418F015123N/ALVSGGATGRATYLVYWDQNEEVDFLSMPSGTQGQLLPAWDLNGQVCILPDGRFVGGYDPTLPNQDNLGSAKPYKQPADGEELEEPNGSFSGETLYVPGPYKMPGQPIGGDSPPTANGVFNNNQTYTGCAIDKSGNVFANDIATAQGSYPPPSSGRLVEWFAPSYTTSCIVYGPTTGGVGAHHTDGTGGLAQPGMMALADNGDLLVPNVGTSSVLRFAESSMPTSASECPGGVYPRSKVHLTDFVKNVSFPAGVAKDPTCDCFAVSSYIGNPSITWYTNSGQPAPGRGTVPGTTIADLGKSSGQYNPFGMAFAPDGTLYFIDIHITCTGTLTGCGPADYGGRVMRVTFTNGQPATPVAVATGFDFPTSVTVCVPATHVCPYPTGKIVAPLSGPSENPAPDAGPKSDAPAKAGFG*
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