Scaffold Ga0136449_100000104

Overview

Basic Information

• Taxon OID: 3300010379
• Scaffold ID: Ga0136449_100000104
• Source Dataset Name: Sb_50d combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 181538
• Total Scaffold Genes: 169
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 104 (61.54%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013877	Metagenome / Metatranscriptome	267	Y
F033558	Metagenome	177	Y
F076361	Metagenome / Metatranscriptome	118	Y
F094245	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136449_10000010455	F013877	GAG	MNFSSDIEGQEIHIELKYCERCGGLWLRLQGTEGAYCSNCRQHMAAMPDPGEAPPRKARRRHKARRQGTDAKDAQRGDLETPVRIEYLQGVAVMEVSA*
Ga0136449_10000010460	F076361	N/A	VNELRPDEVANFMDALVQGGATLESNAQMVNLLLSCSANDVVPAGYVAGSYYVCPSSGTEADFRPTVNSPVRDKGANLGAEYQYDLMGINQNLFGTRWEIGAYVYVPENFSANH*
Ga0136449_10000010473	F033558	AGG	MSENDSRTSPLVRLPLAQFIDRALEAERRSMEAEFRHRDGLQEAQLRAEDLRHAAGDAKIAKANEVLDYRLAEMNNFREQINRERTEYVRREMYDREHGALAERVKALEIIRGEQTGRTAAYASMVAFVLIVVQVVLHFWK*
Ga0136449_10000010480	F094245	AGGAGG	MSINRLFAIFFGIFLLLSVATGQSLSEGSVVGLQVEPNPLNSTLVYDFELCCGYPSGKGGFLGNGFAYVDHELTLFYKYPQEISGYSFSGTIDTWYIPQAISNYCTMQSGTLKDGEMTLGDKVAGTGLVAEYSQLFCQRDGVYWLGPGGLTVHAQ*