Scaffold Ga0126381_100228116

Overview

Basic Information

• Taxon OID: 3300010376
• Scaffold ID: Ga0126381_100228116
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2508
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis → Nocardiopsis algeriensis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013663	Metagenome / Metatranscriptome	269	Y
F014996	Metagenome / Metatranscriptome	258	Y
F029532	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126381_1002281161	F029532	N/A	VVGSTMALARALLDRGDRDGVRRLASFLADAGEDSTAAELKIQLGKAVWDSYREPLQDISAAMAPEAIPRAIDALRAVLLEIPEDVPDRNREVNRFLPPLAASVHAIMRDQGIDIPYSSRVEHIATGGVARYPDIVKLSLDEIAAEFEGTCNPPGALFKTGRRAQAFWPARAARSVIQDRPSEYGPSGPYERPVHQLRREPQREPG*
Ga0126381_1002281163	F014996	N/A	VATGTNAVHADIEALKGFHEALVRFRYAQRGVAERGGDEIAMTRASLAAKASRWQARLEQCQAELDACRAADGEEAADCSAQVRAVEQAGERLEHVRRWQQRVDAGAGEFGGAAGAYLDLLEVDLPRAESRLLAIITSLEAARRVPAGET*
Ga0126381_1002281164	F013663	GGA	MTARPDRDGGEQLGLLGAAWEDVAQHWQDEVAHRFETDHWTPLAQRSRAYLAALGALLDVLETAERETEF*