NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126381_100006363

Scaffold Ga0126381_100006363


Overview

Basic Information
Taxon OID3300010376 Open in IMG/M
Scaffold IDGa0126381_100006363 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13049
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (56.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001327Metagenome / Metatranscriptome721Y
F006631Metagenome / Metatranscriptome368Y
F018038Metagenome / Metatranscriptome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0126381_10000636316F006631N/AMTDAALSGVIAVEKHELSKIHFEIIDDAFNTLLQYRPDPVIVDLRNMFRDAHTGWLGIEKETA*
Ga0126381_10000636318F018038N/AMKFRISYFAKPSAPGGMPPLLAAPTGDFNTVDDARKAAVADADKIGTAESIIIDPIGERWVKGERLVRTDSGWERVPEPER*
Ga0126381_1000063638F001327GGAMAGRVNWSRISNRERMHRQGVEDIKGKTPLVSPSAKVRRRLSKAELREQAEAAFLAWRAGQPPKDK*
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