Scaffold Ga0134128_10362439

Overview

Basic Information

• Taxon OID: 3300010373
• Scaffold ID: Ga0134128_10362439
• Source Dataset Name: Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1619
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil → Terrestrial Soil Microbial Communities With And Without Nitrogen Fertilizer From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Kellog Biological Station, Michigan
• Coordinates
  • Lat. (^o): 42.3938
  • Long. (^o): -85.3708

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000805	Metagenome / Metatranscriptome	883	Y
F021376	Metagenome / Metatranscriptome	219	Y
F100779	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134128_103624391	F021376	GAG	LYIKHLTSLQFLTYVGFFAIVLAAMFKFVPGKAPPVRTEPYPEDELGAHDRNT
Ga0134128_103624394	F000805	AGGAG	MPSGDSPAKAHQYYEYLQSHDQTMQVPATWHVHWLDLAWLWGFLIALAVIILWWLGQYRSTRQGGIYHADQFGGYTTEAAGPATRFFLLFTVIVTGWAVVLIVGHLVWGQKF*
Ga0134128_103624396	F100779	N/A	SLQDAANGIKAIYDDMLNRAWSDAKARGEKLPTESQKAIPPTVPGQQ*