Scaffold Ga0134125_10009209

Overview

Basic Information

• Taxon OID: 3300010371
• Scaffold ID: Ga0134125_10009209
• Source Dataset Name: Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11119
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil → Terrestrial Soil Microbial Communities With And Without Nitrogen Fertilizer From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Kellog Biological Station, Michigan
• Coordinates
  • Lat. (^o): 42.3938
  • Long. (^o): -85.3708

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012128	Metagenome / Metatranscriptome	283	Y
F020185	Metagenome / Metatranscriptome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134125_100092096	F012128	GGA	MERLRELRGPDTRERDLANILGFEHSRAVRWKEGQMYVDRAEYLVRLADALDVETMLLVAMASGTLTVEQAHRQIAGAGRLDDGKRKKGAVRPEPLEVATDASLFALDGSKFEAAGRGVVLLIAGNGEGRLEFGEALARHTDVSGMVASGLSIGICLAERYRPELVFLDLGVANVHAFEACRVLSSLTSRAQRRCRVVAGTATVTDEVEKPALMAGAANVTLFPFPSSLFESELDRLEERLGPRKVARR*
Ga0134125_100092097	F020185	N/A	MPRMRTIVWVGAGLLLLGVGCGIALRRDLSAIPPGQVGFDDMCGLQEYFDALEIKTAPPPRVVSALDLEGQSGGKTTRGGKERFAFEDDFQLKHLRRVLNQNWRRLPPELAAANAIEIEVRWSEKAGAKRVVTDQDSEISAGGQSWPLPYHPCLSELLYGAPLYRQRREMWGLPLPGQVPDGGAGTALPPISTGPLVGGGDAGAADGHPG*