Scaffold Ga0129336_10044503

Overview

Basic Information

• Taxon OID: 3300010370
• Scaffold ID: Ga0129336_10044503
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2662
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F003112	Metagenome / Metatranscriptome	506	N
F025282	Metagenome	202	Y
F039992	Metagenome / Metatranscriptome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129336_100445032	F000635	N/A	MTLSEIATFAGEKIGKTDVDTVTFLKKSASLNYRRVWNFAPWRESVTTSTYSVGTGRTITLGTNVETPLSVAYDQSEVEPIDLSTIVSQDADLLEDTRTGTPVLYHFTGRNTSGVAQLDLYPRLDTAGTISLRVVEKLKCVTRNNYVVDFPPSTDALDDELRLPHVHQVVLALTHSDALERERQYAKAAQIVQTANADLAAMANYELSQVGGIKQITPSSLGDLTTEEITAS*
Ga0129336_100445033	F025282	AGGAG	MNDPYLASVTHDISSNTLEALWIQDDGISLNRVKCRNYSADQKDEFLQDCGDLGQKYVLMAGW*
Ga0129336_100445035	F039992	GGAGG	VSLDEVHDLREKFGTMAERLARMEERQVTLIGMVERSLSSFGDLSNRVTSLEHLKTKMLLVAGGIGAIVSVVWDAIRSRLTHGG*
Ga0129336_100445036	F003112	N/A	MTRKEYVCFKEALRFAGENNTVAKETKYIGKVKHLLSVNRSIKRIVEEGRDRDEIVDAVVHLAVALKYLEGKGRES*