Basic Information | |
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Taxon OID | 3300010370 Open in IMG/M |
Scaffold ID | Ga0129336_10013769 Open in IMG/M |
Source Dataset Name | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_DNA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4930 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Chesapeake Bay | |||||||
Coordinates | Lat. (o) | 39.2637 | Long. (o) | -76.0017 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F018159 | Metagenome | 236 | Y |
F038593 | Metagenome | 165 | Y |
F057985 | Metagenome | 135 | N |
Protein ID | Family | RBS | Sequence |
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Ga0129336_100137693 | F057985 | AGGAG | VAANSLDRLTISFNVDSNYKALQLGFLEGANPGAYKRLLSIATLNAARTMVKPMRAEAPVGKTTKTPGRLRKAVTARRARFNTPAAVVGPRAGRSRDGGSGGAWYRWFVTSGISGVRQTKNGPKAVKAVPANPFVTRVSKNEGHQKTAMEAMAKTIESFFNNGAFRATILKFRRR* |
Ga0129336_100137694 | F038593 | AGGAGG | MAQAKPDFRTVEVALAAPFDGWTATMKADGVPARVFIELQSGNVERAMHAVERLIVSHNFLNEDGEKAESVLDAPMDALTQTIGKWSEAIAALPPR* |
Ga0129336_100137697 | F018159 | AGAAGG | MSFDDRTIIAGLAAHLSAKAAPTGYTLRTVHSYPPDNLAVVPAAVIIPGDDTIAYGASNRQVTLTLNVTVYIQPQADLGRKYQDLMAWRTWLRDSLIDGVTLDGTDAVAQASVTSTNIGTDTWGDADYLTISASVEISAVEAIATSA* |
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