NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116251_10122326

Scaffold Ga0116251_10122326


Overview

Basic Information
Taxon OID3300010365 Open in IMG/M
Scaffold IDGa0116251_10122326 Open in IMG/M
Source Dataset NameAD_USDIca
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1693
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin016(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA, Massachusetts, Boston
CoordinatesLat. (o)42.35Long. (o)-70.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049017Metagenome / Metatranscriptome147N
F050405Metagenome / Metatranscriptome145N

Sequences

Protein IDFamilyRBSSequence
Ga0116251_101223262F050405AGGMITEQEVITICKANYDANLITQGALLVGMRKVRDIIGSALYKKVEQIGYEELLEKCKTLAAWSVHALMVDRIATEMTNKGVYQLYTVGSNGVQLTELTQIKAAINEITTACANEIKDFIQERVAAKDPLYVNYVSEIRTTSKPSLVSNLKRITQI*
Ga0116251_101223264F049017N/APGNSRLFFTEAANIGSITVTTNEISAITMNGTPTPVKFQEFGADIDSIKFTIEGTGSASYSEVQKLEAKFSKKTTALITAKNSLLDAVACGVAIIRVDNNGKAWLSGYTMNDKNRRAYNKITTNFDTGAKPSDEGTAAYTITLEAEGFDDELAFDTTLNTAIVGGTATFIDYN*
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