Scaffold Ga0116251_10010969

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0116251_10010969

Scaffold Ga0116251_10010969

Overview

Basic Information
Taxon OID	3300010365 Open in IMG/M
Scaffold ID	Ga0116251_10010969 Open in IMG/M
Source Dataset Name	AD_USDIca
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10467
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (20.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	USA, Massachusetts, Boston
Coordinates	Lat. (^o)	42.35	Long. (^o)	-70.96	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F051988	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116251_100109691	F051988	N/A	EEGYNGNTMNQLDLSVNALNGQFTDYRSRVDLFDAYLVDVEAALAQKAVKGVNITAFIAGAKAANQFQKAGMIGKFEKNTKISYISDLIGWYDGIPVLRSTDINESANGGKAVFYAIHKTPDGQMAPLARGIFMPLTDTPTVGNYANPTQMAAGIYYQEGIKTMANELVQRVEFAAGI*

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