Scaffold Ga0134066_10272583

Overview

Basic Information

• Taxon OID: 3300010364
• Scaffold ID: Ga0134066_10272583
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 595
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Angelo Coastal Reserve, California
• Coordinates
  • Lat. (^o): 39.7181
  • Long. (^o): -123.6527
  • Depth (m): .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F065748	Metagenome / Metatranscriptome	127	Y
F066970	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134066_102725831	F066970	AGG	MWVKHLSSLQFLTYVAFFAVVIAGICRFVPGRAAPVREEPYPDEEL
Ga0134066_102725832	F000280	AGAAGG	MAADEERGRRPRPSAARPLVGYRDVGEDVRHSRRAQTRAWVILGSLMLIYLGWTLVIYFLEPGLR*
Ga0134066_102725833	F065748	N/A	WPFVFASLQALKGHVQEYPGCQKLEAFVHADADGAVRVQCFTTWDTPEQLEAFLERGYTFDRMLIDVAEIVAEPTLVMEKVF*