Scaffold Ga0126372_10958916

Overview

Basic Information

• Taxon OID: 3300010360
• Scaffold ID: Ga0126372_10958916
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_6
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 863
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003418	Metagenome / Metatranscriptome	488	Y
F005651	Metagenome / Metatranscriptome	394	Y
F025580	Metagenome	201	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126372_109589161	F003418	N/A	PEGVVLAEIHLGEHATNCIFDGSVLYVTATKVPDIEASQRTGTFWRVQTDAVGLPLLPGRL*
Ga0126372_109589162	F005651	GGAG	VRADERSFRIALVADRFVNPPPGGVDAVAAAAQAGWGVMQLPPDDYPAEVTGPLLAEVAEQVEEFSRHGYAFVVVGGHPGLAGALARAGIAVPDQITPATAVQLIDFLNGRPAPAAGWDPSQVPG*
Ga0126372_109589163	F025580	N/A	AISVRVGQGEDVVLVGVEGSPSMGVTVTSSDPLRGGRPEWPDGTAEHTSGEGIFVEEIRNALARRGINFPRVAGETHALADHDEATQRAGIESVLENP*