Scaffold Ga0126372_10299601

Overview

Basic Information

• Taxon OID: 3300010360
• Scaffold ID: Ga0126372_10299601
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_6
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1412
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000145	Metagenome / Metatranscriptome	1927	Y
F000257	Metagenome / Metatranscriptome	1447	Y
F067990	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126372_102996011	F067990	GGA	MAVSKLVAFVALAFCFVAGYLLAGWWWSSARDTSPLAQICARVDYVNGLQ
Ga0126372_102996014	F000145	N/A	MIYGPKPDGTYEIEFQTADGETLAISVPAGETRVLKHFQARMPYGLFVPDVP*
Ga0126372_102996015	F000257	N/A	SGGGLGEMTRRKREIVGLANEQGFPHLVELALPPVGFRSVFLEIDAFHRDRRIPVRRGRSRHEAEQFYIRFCFPDTATADAFRNRFGGYRP*